課程資訊
課程名稱
進階植物基因體學
Advanced Plant Genomics 
開課學期
110-2 
授課對象
生物資源暨農學院  作物科學組  
授課教師
黃永芬 
課號
Agron7035 
課程識別碼
621EM2080 
班次
 
學分
2.0 
全/半年
半年 
必/選修
選修 
上課時間
星期三8,9(15:30~17:20) 
上課地點
農藝304 
備註
本課程以英語授課。先修科目:基因體,分子生物學,生物資訊學.與李承叡合授.與李承叡合授
總人數上限:20人 
 
課程簡介影片
 
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課程概述

Genome science is integrated into a large variety of life science research, enabling plant scientists to gain insights on the cause of phenotypic variation, species evolution, crop domestication, etc. Understanding genome organization and evolution has been shown as an effective way to design strategies for gene discovery, functional studies, as well as for crop breeding. Indeed, the outcome of a genome project is not only the series of nucleotide sequences, but also the history, biology and possible applications that the sequence data tell us. This course aims to provide students an integrative view of plant genomics through the presentation of various genomics-related topics.

We invite genomic researchers to share with us the first-hand stories on plant genomics:
Lecturers (alphabetical order):
1. Chen, Ko-Hsuan 陳可萱 (Biodiversity Research Center, , Academia Sinica)
2. Chen, Pao-Yang陳柏仰 (Institute of Plant and Microbial Biology, Academia Sinica)
3. Huang, Yung-Fen黃永芬 (Department of Agronomy, National Taiwan University)
4. Kuo, Chih-Horng 郭志鴻 (Institute of Plant and Microbial Biology, Academia Sinica)
5. Lee, Cheng-Rue 李承叡 (Institute of Ecology and Evolutionary Biology, National Taiwan University)
6. Lin, Shih-Shun林詩舜 (Institute of Biotechnology, National Taiwan University)
7. Lin, Ya-Ping 林亞平 (World Vegetable Center) 

課程目標
This course aims to provide students an integrative view on plant genomics through the presentation of various topics related to plant genomics, as well as applications in basic and applied sciences. 
課程要求
Students having studied plant genomics, molecular biology, and/or bioinformatics are welcome. Students’ interactive participation is required. 
預期每週課後學習時數
 
Office Hours
另約時間 備註: Upon appointment 
指定閱讀
Please refer to "References". 
參考書目
The list of research and review articles will be provided at each lecture. 
評量方式
(僅供參考)
 
No.
項目
百分比
說明
1. 
Reports on invited talk 
50% 
A 500- to 1000-word (Times New Roman, 12 pt, single space) report after each invited lecture. The content should contain what the student has learnt from the lecture, his/her personal reflection on the topic, and what and how the lecture has inspired the student. 
2. 
Term report (written) 
25% 
A mini-review on a topic in plant genomics. 
3. 
Oral presentation 
25% 
Oral presentation of the term report. 
 
課程進度
週次
日期
單元主題
第1週
02/16  Introduction/Review of the basics [Huang, Yung-Fen] 
第2週
02/23  Genomics of plant-associated bacteria [Kuo, Chih-Horng] 
第3週
03/02  Transposable elements [Huang, Yung-Fen] 
第4週
03/09  P1/HC-Pro-mediated miRNA regulation [Lin, Shih-Shun] 
第5週
03/16  Genebank genomics reveals our allies from the wild: explore the Amaranthus Genus [Lin, Ya-Ping] 
第6週
03/26  Brachypodium genomics [Huang, Yung-Fen] 
第7週
03/30  Genome-wide DNA methylation in plants and fungi [Chen, Pao-Yang] 
第8週
04/06  To be announced [Chen, Ko-Hsuan] 
第9週
04/13  Population genomics (1) [Lee, Cheng-Ruei] 
第10週
04/20  Population genomics (2) [Lee, Cheng-Ruei] 
第11週
04/27  Population genomics (3) [Lee, Cheng-Ruei] 
第12週
05/04  Population genomics (4) [Lee, Cheng-Ruei] 
第13週
05/11  Paleogenomics [Huang, Yung-Fen] 
第14週
05/18  To be announced [Huang, Yung-Fen] 
第15週
05/25  Genomics applied to breeding [Huang, Yung-Fen] 
第16週
06/01  Final term